Pecan Pie Cheesecake
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Pecan Pie Cheesecake with real pecan pie filling on top of a creamy cheesecake base.

Fall is officially upon us and I can think of no better way to celebrate than with apple pie cheesecake and pecan pie!
But not just any pecan pie, I’m talking about a pecan pie cheesecake. A rich creamy cheesecake topped with real pecan pie filling. Sounds incredible, doesn’t it?
This recipe is a fun way to take two well-loved classics and combine them into one. It tastes so good, you’ll want to make it all season long.
Don’t let this recipe scare you. I know there are quite a few ingredients and the steps to making the cheesecake look overwhelming but it’s really not that complicated.
Why this recipe works
- There’s a lot of crust! This will help hold the filling and topping. Plus there are ground pecans in the crust for more flavor!!
- The batter for this recipe is from my basic cheesecake recipe. I scaled it back some so there would be room for the pecan pie filling on top. It gets baked for over a half-hour before adding the topping.
- The filling calls for rum but you could bourbon also. Or if you don’t want to use alcohol, you can mix in vanilla extract instead. It bakes up gooey and sticky on top of the cheesecake. It’s perfection!

Pecan Pie Cheesecake Recipe
This cheesecake got rave reviews with my taste testers. It has a creamy filling, crunchy crust, and ooey-gooey pecan pie topping.
I’ve retested the recipe, updated the process, and made a video with process shots to help you have success when making it. The biggest challenge is preventing the cheesecake from sticking inside the pan. Even with lining it and spraying it with nonstick spray, the topping seeped down and “glued” the springform together.
I tried so many different ways of baking it and the same thing happened every single time. The easiest way to prevent this from happening is to avoid using all the syrup with the topping. I’ll go over this in detail down below.
Pecan Pie Cheesecake Ingredients
While the ingredient list is long, most of the ingredients are used in multiple parts of the recipe. Go ahead and measure everything out to save time when putting the recipe together. Also, make sure to bring all the cold ingredients to room temperature before you begin baking.
- Graham crackers: You need 2 whole sleeves of graham crackers to make enough crumbs for the crust.
- Pecans: I used ground pecans in the crust and chopped pecans in the topping. Make sure the pecans are raw and unsalted.
- Sugar: Both granulated white sugar and brown sugar are used in the recipe. White sugar goes in the cheesecake filling. Brown sugar goes in the crust and topping. You can use light or dark brown sugar.
- Butter: Melted unsalted butter holds the crust together. Then butter also goes in the topping.
- Cream cheese: Use full-fat brick-style cream cheese for the best results.
- Sour cream: Full-fat sour cream is best. You could probably use Greek yogurt also but I haven’t tested it.
- Vanilla extract: A high-quality pure vanilla extract will give the best flavor. It’s used for both the filling and topping.
- Salt: Just a tad for flavor.
- Eggs: Eggs are used as binding in the cheesecake layer. They are also added to the topping to create a gooey pecan pie filling.
- Dark corn syrup: I prefer dark corn syrup but you can also use maple syrup.
- Rum: Rum or bourbon adds so much flavor to the topping. If you must avoid alcohol, you can use vanilla instead.
- Heavy cream: Heavy cream is added to the topping to help create the rich, gooey texture of pecan pie.
To bake this cheesecake you need:
- Springform pan: This recipe will completely fill a 9-inch springform pan.
- Electric mixer: You can use either a stand mixer or handheld electric mixer to make the cheesecake filling.
How to make pecan pie cheesecake?
There are several steps to making pecan pie cheesecake. You must first make the crust, then the filling followed by the topping. It takes time so make sure you plan ahead before starting this recipe.
The Crust – I used a scaled-up version of my usual graham cracker crust and added ground pecans. The crust is assembled and baked before the cheesecake filling is added.
The Filling – The filling is about half of my best cheesecake recipe. It gets baked for about 40 minutes before adding the topping.
The Topping – The topping is a from Joy of Baking. It’s the best pecan pie filling I’ve tried.
Step 1: Make the crust
Start by pulsing the graham crackers and pecans in a food processor until finely ground. You can continue to mix the crust in the food processor or transfer the ground crackers and pecans to a mixing bowl.
Add brown sugar and melted butter to the ground graham crackers and pecans. Mix until everything is well mixed and resembles wet sand.

Line the inside bottom and sides of a 9-inch springform pan then wrap the bottom with tightly with foil.
There is a chance that some of the topping will seep down under the cheesecake and leak out of the pan. Wrapping it will foil will help prevent it from spilling in the bottom of your oven.
Press the crust tightly into the bottom and up the sides of the pan. There’s enough crust to work it pretty far up the sides. This will help hold topping once it’s added.
Bake the crust for 10 minutes then set it aside to cool while you make the filling.
Step 2: Make the cheesecake filling
Using either a stand mixer fitted with the paddle attachment or a handheld electric mixer, beat the cream cheese on medium speed until it is smooth and creamy.
Then add sugar, sour cream, vanilla, and salt. Mix on medium speed until you have a lush, creamy consistency. Lightly beat eggs and add them to the batter. Fold them in gently with a silicone spatula.
I use this method for adding eggs in every single one of my recipes. It helps prevent adding extra air which is the main cause of cracks in cheesecakes.


Spread the batter evenly into the bottom of the prepared crust and bake it for 40 minutes. The cheesecake will be just set enough to hold the filling without collapsing.
Typically, I’d recommend using a water bath for cheesecakes but it’s really not necessary for this one since we are topping it with pecan pie filling.
Step 3: Make the pecan pie topping
Start on this step while the cheesecake is baking!
Melt brown sugar, dark corn syrup, rum, and butter together in a medium saucepan. Bring the mixture to a boil and allow it to boil for 2 minutes.
Remove from heat and set aside to cool while the cheesecake bakes.

After the cheesecake has baked for 40 minutes, remove it from the oven and continue with the making the topping.
Whisk eggs, heavy cream, and salt together in a small bowl or 2-cup measuring cup. Gradually pour the egg mixture into the slightly cooled syrup while whisking continuously until everything is well combined.
Stir in the chopped pecans making sure all the pecans are coated in the syrup.
Use a large spoon to gently spoon the topping over the cheesecake.
TIP: Don’t add all the syrup! Spoon the pecans on first, then add just enough syrup to fill the crust. If the syrup goes above the crust, there’s a high chance that it will leak down under the crust. This causes the crust to become runny and the syrup will “glue” the springform pan together.
Return the cheesecake to the oven and bake for an additional 50 minutes. The top should look golden brown and crisp.
Remove the cheesecake from the oven an allow it to cool completely.

Pecan pie cheesecake does need to be refrigerated for at least 4 hours before serving but it’s better if you let it chill overnight.
When you are ready to serve it, remove the sides of the pan and transfer the cheesecake to a serving platter.
To cut the cheesecake, use a sharp knife and run it under hot water to warm the blade. Carefully wipe the water off the blade then make a cut in the cheesecake. Repeat this step with each cut and your slices should come out perfect.
TIP: I also recommend freezing the cheesecake for 1-2 hours before slicing it. Do this if you have time because a frozen cheesecake slices neater. Then allow the slices to thaw before serving. Thawing will only take about 30 minutes at room temperature.

Can pecan pie cheesecake be frozen?
Yes, it certainly can. After it has set in the refrigerator, remove the springform pan and wrap the cheesecake tightly with plastic wrap and a layer of aluminum foil.
It can be frozen for up to 2 months. Thaw the frozen cheesecake overnight in the refrigerator.
Tips for making pecan pie cheesecake
- As with all cheesecakes, this one needs time for preparation and refrigeration. Plan accordingly.
- No water bath is needed for this recipe. The cheesecake will remain creamy and any cracks that may form will be covered with the topping.
- Bake this cheesecake on the middle rack.
More cheesecake recipes you’ll love

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Pecan Pie Cheesecake
Pecan Pie Cheesecake with real pecan pie filling on top of a creamy cheesecake base that's nestled in a graham cracker crust.
Ingredients
For the crust
- 2 cups (272 g) graham cracker crumbs, about 18 whole crackers
- 1 cup (100 g) pecans, finely ground
- ¼ cup (55 g) light brown sugar, packed
- 8 tablespoons unsalted butter, melted
For the filling
- 16 ounces (452 g) cream cheese, softened
- ½ cup (100 g) granulated sugar
- ½ cup (114 g) sour cream, room temperature
- 1 tablespoon vanilla extract
- ¼ teaspoon salt
- 2 large eggs, room temperature, lightly beaten
For the topping
- 1 cup (220 g) light brown sugar, packed
- ⅔ cup (227 g) dark corn syrup - SEE NOTE 1
- 1 tablespoon dark rum - SEE NOTE 2
- ¼ cup (56 g) unsalted butter
- 3 large eggs
- ¼ cup (60 ml) heavy cream
- ¼ teaspoon salt
- 2 and ½ cups (260 g) coarsely chopped pecans
Instructions
Make the crust
- Move the oven rack to the middle position and heat the oven to 350°F. Line the inside bottom and sides of a 9-inch springform pan with parchment paper or aluminum foil and spray lightly with nonstick spray. Wrap foil around the outside bottom as well and set aside.
- Stir the graham cracker crumbs, ground pecans, brown sugar, and melted butter together until it resembles wet sand. Press the crumb mixture into the bottom and up the sides of the prepared pan. (There's enough crust to go pretty far up the sides of the pan. You need it to be at least ¾ of the way up so it's tall enough to hold the filling and topping.)
- Bake for 10 minutes. Set aside to cool while you make the filling.
Make the filling
- Reduce the oven temperature to 300ºF.
- In a large mixing bowl beat the cream cheese with an electric mixer on medium to medium-high speed until smooth and creamy, about 1 minute.
- Add the sugar, sour cream, vanilla, and salt. Beat on medium speed until well combined.
- Using a silicone spatula, gently stir in the eggs just until combined. Pour the batter into the prepared crust. Use an offset spatula to spread the batter evenly into the bottom.
- Bake for 40 minutes. Once the cheesecake goes into the oven, begin working on the topping.
Make the topping
- Combine the brown sugar, corn syrup, rum, and butter in a medium saucepan. Cook over medium heat until it reaches a boil, stirring constantly. Continue to boil for 2 minutes.
- Remove from heat and let cool while the cheesecake is baking. Meanwhile, whisk the eggs, salt, and cream together; set aside.
- Once the cheesecake has baked for 40 minutes, remove it from the oven.
- Slowly whisk the egg mixture with the cooled sugar syrup until well combined. Stir in the chopped pecans.
- Gently spoon the pecan topping over the cheesecake. (Spoon the pecans over then add just enough of the syrup to fill the crust. If the topping goes above the crust, there's a chance it will leak down under the crust and make the crust soggy. It will also "glue" the springform together.)
- Return the cheesecake to the oven and bake for another 40-50 minutes, until the top is golden brown and crisp. (If the edges of the pecan topping are over-browning during baking, cover with foil.)
- Transfer to a wire rack and cool completely. Cover the cheesecake and refrigerate for at least 4 hours before serving.
To serve
- Slowly loosen the sides of the springform pan. (Hopefully, the topping hasn't run down and glued the pan together.) If the sides seem stuck, gently run a butter knife around the edges of the cheesecake to loosen it and press the bottom of the pan upwards. Once the sides and bottom of the pan are free of each other, lift the outer ring of the pan to remove it.
- Carefully transfer the cheesecake to a serving platter. I recommend freezing the cheesecake for 1-2 hours before slicing. This makes it easier to get neat slices.
- Run a sharp knife under hot water and carefully dry the blade. Make a cut in the cheesecake. Repeat with rinsing the blade under hot water, carefully dry it, and make the next cut. Do this for each slice.
- If you froze the cheesecake before slicing, let the slices sit at room temperature for 30 minutes before serving.
Notes
- If you don't want to use dark corn syrup or don't have access to it, you can substitute with maple syrup or honey. Keep in mind these will change the flavor slightly.
- Dark Rum or Bourbon can be used. If you don't want to add the alcohol, you can use pure vanilla extract in its place.
- It is important to press the crust up the sides of the pan also. Try to get it at least ¾ of the way up. This will help hold the pecan pie filling once it is added to the cheesecake.
Prevent a soggy cheesecake! Read through my helpful tips on how to create a leakproof water bath.
Make ahead tip
- The baked and chilled cheesecake will keep for up to 4 days covered tightly and stored in the refrigerator.
- Pecan pie cheesecake will keep for up to 2 months covered tightly and stored in the freezer. Slice while frozen then allow the slices to thaw before serving.
- Pecan pie topping from Joy of Baking.
- Method adapted by Jo Cooks.
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Nutrition Information:
Yield: 14 Serving Size: 1Amount Per Serving: Calories: 323Total Fat: 24gSaturated Fat: 12gTrans Fat: 0gUnsaturated Fat: 10gCholesterol: 118mgSodium: 358mgCarbohydrates: 16gFiber: 1gSugar: 12gProtein: 10g
* Percent Daily Values are based on a 2000 calorie diet. Since different brands of ingredients have different nutritional information, the values shown are just an estimate.
- Pecan pie topping from Joy of Baking.
- Method adapted by Jo Cooks.
I tried this recipe for Thanksgiving. It was a big hit. I loved that you added helpful hints for baking. I will definitely be making this again and I was also asked for the recipe.
Is the topping crunchy or gooey? I want mine crunchy.
It’s a little but of both, just like pecan pie. The nuts on the surface will crispen up but the filling in between the nuts and under will be gooey.
I made this recipe few years ago and it was great. I tried it again tonight and for some reason it didn’t bake correctly. The cheesecake didn’t cook enough the first time in the oven so even though the pecan topping sat on top when it went in the oven, the syrup part sunk to the bottom as it cooked leaving the pecans on top and no pecan pie gooeyness 🙁
Hi there,
This is looks AMAZING and I’m wondering if I use could this topping on your mini cheesecakes? If so, any suggestions on timing, etc.?
I have not used this topping on the mini cheesecakes so I can’t advise you on how long to bake them.
This pecan cheesecake was a huge crowd-pleaser. I made a few modifications to the recipe because I had to work with what I had. I used 1/2 butter pecan syrup and 1/2 sugar-free syrup for the dark corn syrup. I had 1/4 cup of plain pecans and substituted the rest with Keto Maple Pecans (sold in the bulk section of H-E-B) in the crust and the topping.
I am curious if I can use Skinny Syrup (Butter Pecan) as a replacement for the dark corn syrup or should I use some as added flavor to the sugar free syrup?
I’m glad you enjoyed the recipe with the changes you made. I’ve never used skinny syrup before so I can’t say it that’s a suitable replacement.
Incredible!! Have now made twice – first time for my husband’s birthday last year exactly to recipe using the maple syrup option as dark corn syrup is not easily available here in Australia (though I didn’t press the crust high enough on the side of the tin, so had a lot of leftover topping sadly).
Made again this week for my brother’s birthday and it was a huge hit. Everyone loved it. Totally worth the effort! I had to adapt to make it gluten free (used gluten free Choc Ripple biscuits available in Australia), plus lactose free cream cheese, sour cream and thickened cream.
Just wow, thank you so much for this!
Did I miss the temp for the baking? I read through the whole post a couple of times looking for it. Oh well, I did the base at 350, we’ll see in the morning how it turned out.
The full recipe with baking time and temperatures is at the bottom of the post.
Instead of Graham crackers, I used biscoff cookies for the crust and it was amazing. This was a huge hit at friendsgiving.
That sounds phenomenal! So glad you enjoyed the recipe.